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COSEDA Documentation
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COSEDA Documentation

Before You Start

  • Filestructure
  • Dataset INI files
  • Workspaces

How-to Guides

  • Install on Linux
  • Install on macOS
  • Manual installation
  • Release Management

Workflow

  • Import data
  • Preflight check
  • Peak finding
  • Remove empty frames
  • Center finding
  • Center refinement
  • Detector geometry correction
  • Indexing & integration
  • ICI Orchestrator
  • Merge
  • Export

Tools

  • Atlas Viewer
  • Aurora Plot
  • Workspace Unit Cell Fit
  • Export Current Frame
  • Inspect Image

API Reference

  • coseda
    • coseda package
      • coseda.centerfinding package
      • coseda.centerrefinement package
      • coseda.exporters package
      • coseda.ici package
      • coseda.importers package
      • coseda.initialize package
      • coseda.map package
      • coseda.nexus package
      • coseda.peakfinding package
      • coseda.pipeline package
  • cosedaUI
    • cosedaUI package
      • cosedaUI.importers package
      • cosedaUI.indexintegrate_sections package
      • cosedaUI.mainwindow_sections package

Tutorials

  • MIL-101(Cr) Tutorial
  • SciLifeLab Workshop 2025
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